H. Bekker, E. P. Braad, B. Goldengorin, Selecting the roots of a small system of polynomial equations by tolerance based matching .

H. Bekker, E. P. Braad, B. Goldengorin Using bipartite and multidimensional matching to select the roots of a system of polynomial equations

Henk Bekker, Axel Brink, Reducing the time complexity of Minkowski-sum based similarity measures by using geometric inequalities,
Proceedings of the international conference on computational science and its applications 2004,
LNCS, vol. 3045 part III, 32-41, Springer Verlag.

Henk Bekker, Jur P. Van Den Berg, Tsjerk A. Wassenaar, A method to obtain a near-minimal-volume molecular simulation of a macromolecule,
using periodic boundary conditions and rotational constraints, Journal of Computational Chemistry, Vol. 25, No. 8, 1037-1046 (2004).

H. Bekker, K. de Raedt. Mapping graphs on the sphere to the finite plane, Proceedings of the international conference on computatational science,
Amsterdam, april 2002, LNCS, vol. 2331 part III.

H. Bekker, J.B.T.M. Roerdink. An efficient algorithm to calculate the Minkowski sum of convex 3D polyhedra,
Proceedings of the international conference on computatational science, San Francisco, may 2001,
LNCS vol. 2073 part I, Springer Verlag.

J.B.T.M. Roerdink, H. Bekker, Similarity measure computation of convex polyhedra revisited,
G. Bertrand et al (Eds.): Digital and image geometry, LNCS 2243, pp. 389-399, 2001. Springer Verlag.

H. Bekker, H. J. Berendsen, W. F. Van Gunsteren, Force and virial of torsional-angle dependent potentials,
Journal of computational chemistry, Vol. 16, No 5, 1995

H. Bekker, E. J. Dijkstra, H. J. C. Berendsen, M. K. R. Renardus,
An efficient box-shape independent non-bonded force and virial algorithm for Molecular Dynamics, Molecular Simulation, Vol 14, 1995.